ModulesΒΆ
- glhmm.glhmm
glhmm
glhmm.decode()
glhmm.dual_estimate()
glhmm.get_P()
glhmm.get_Pi()
glhmm.get_active_K()
glhmm.get_beta()
glhmm.get_betas()
glhmm.get_covariance_matrix()
glhmm.get_fe()
glhmm.get_inverse_covariance_matrix()
glhmm.get_mean()
glhmm.get_means()
glhmm.get_r2()
glhmm.initialize()
glhmm.loglikelihood()
glhmm.sample()
glhmm.sample_Gamma()
glhmm.set_P()
glhmm.set_Pi()
glhmm.set_beta()
glhmm.set_covariance_matrix()
glhmm.set_mean()
glhmm.train()
- glhmm.io
- glhmm.preproc
- glhmm.auxiliary
Gamma_entropy()
Gamma_indices_to_Xi_indices()
approximate_Xi()
compute_alpha_beta_parallel()
compute_alpha_beta_serial()
compute_qstar_parallel()
compute_qstar_serial()
dirichlet_kl()
gamma_kl()
gauss1d_kl()
gauss_kl()
get_T()
jls_extract_def()
make_indices_from_T()
padGamma()
roll_by_vector()
slice_matrix()
wishart_kl()
- glhmm.utils
- glhmm.graphics
blue_colormap()
create_cmap_alpha()
custom_colormap()
interpolate_colormap()
plot_FO()
plot_average_probability()
plot_condition_difference()
plot_correlation_matrix()
plot_p_value_matrix()
plot_p_values_bar()
plot_p_values_over_time()
plot_permutation_distribution()
plot_scatter_with_labels()
plot_state_lifetimes()
plot_state_prob_and_covariance()
plot_switching_rates()
plot_vpath()
red_colormap()
show_Gamma()
show_beta()
show_temporal_statistic()
show_trans_prob_mat()
- glhmm.prediction
- glhmm.statistics
calculate_baseline_difference()
calculate_geometric_pval()
calculate_nan_correlation_matrix()
calculate_nan_f_test()
calculate_nan_regression()
calculate_nan_regression_f_test()
calculate_nan_t_test()
calculate_statepair_difference()
deconfound_values()
detect_significant_intervals()
generate_vpath_1D()
get_concatenate_sessions()
get_concatenate_subjects()
get_indices_array()
get_indices_from_list()
get_indices_session()
get_indices_timestamp()
get_indices_update_nan()
get_input_shape()
get_pval()
identify_coloumns_for_t_and_f_tests()
initialize_arrays()
initialize_permutation_matrices()
permutation_matrix_across_subjects()
permutation_matrix_across_trials_within_session()
permutation_matrix_within_subject_across_sessions()
permute_subject_trial_idx()
process_family_structure()
pval_cluster_based_correction()
pval_correction()
reconstruct_concatenated_design()
remove_nan_values()
surrogate_state_time()
surrogate_viterbi_path()
test_across_sessions_within_subject()
test_across_subjects()
test_across_trials_within_session()
test_across_visits()
test_statistics_calculations()
validate_condition()
viterbi_path_to_stc()
- glhmm.palm_functions